dc.contributor.author | Ming, Ray | |
dc.contributor.author | VanBuren, Robert | |
dc.contributor.author | Liu, Yanling | |
dc.contributor.author | Yang, Mei | |
dc.contributor.author | Han, Yuepeng | |
dc.contributor.author | Li, Lei-Ting | |
dc.contributor.author | Zhang, Qiong | |
dc.contributor.author | Kim, Min-Jeong | |
dc.contributor.author | Schatz, Michael C. | |
dc.contributor.author | Campbell, Michael | |
dc.contributor.author | Li, Jingping | |
dc.contributor.author | Bowers, John E. | |
dc.contributor.author | Tang, Haibao | |
dc.contributor.author | Lyons, Eric | |
dc.contributor.author | Ferguson, Ann A. | |
dc.contributor.author | Narzisi, Giuseppe | |
dc.contributor.author | Nelson, David R. | |
dc.contributor.author | Blaby-Haas, Crysten E. | |
dc.contributor.author | Gschwend, Andrea R. | |
dc.contributor.author | Jiao, Yuannian | |
dc.contributor.author | Der, Joshua P. | |
dc.contributor.author | Zeng, Fanchang | |
dc.contributor.author | Han, Jennifer | |
dc.contributor.author | Min, Xiang Jia | |
dc.contributor.author | Hudson, Karen A. | |
dc.contributor.author | Singh, Ratnesh | |
dc.contributor.author | Grennan, Aleel K. | |
dc.contributor.author | Karpowicz, Steven J. | |
dc.contributor.author | Watling, Jennifer R. | |
dc.contributor.author | Ito, Kikukatsu | |
dc.contributor.author | Robinson, Sharon A. | |
dc.contributor.author | Hudson, Matthew E. | |
dc.contributor.author | Yu, Qingyi | |
dc.contributor.author | Mockler, Todd C. | |
dc.contributor.author | Carroll, Andrew | |
dc.contributor.author | Zheng, Yun | |
dc.contributor.author | Sunkar, Ramanjulu | |
dc.contributor.author | Jia, Ruizong | |
dc.contributor.author | Chen, Nancy | |
dc.contributor.author | Arro, Jie | |
dc.contributor.author | Wai, Ching Man | |
dc.contributor.author | Wafula, Eric | |
dc.contributor.author | Spence, Ashley | |
dc.contributor.author | Han, Yanni | |
dc.contributor.author | Xu, Liming | |
dc.contributor.author | Zhang, Jisen | |
dc.contributor.author | Peery, Rhiannon | |
dc.contributor.author | Haus, Miranda J. | |
dc.contributor.author | Xiong, Wenwei | |
dc.contributor.author | Walsh, James A. | |
dc.contributor.author | Wu, Jun | |
dc.contributor.author | Wang, Ming-Li | |
dc.contributor.author | Zhu, Yun J. | |
dc.contributor.author | Paull, Robert E. | |
dc.contributor.author | Britt, Anne B. | |
dc.contributor.author | Du, Chunguang | |
dc.contributor.author | Downie, Stephen R. | |
dc.contributor.author | Schuler, Mary A. | |
dc.contributor.author | Michael, Todd P. | |
dc.contributor.author | Long, Steve P. | |
dc.contributor.author | Ort, Donald R. | |
dc.contributor.author | Schopf, J. William | |
dc.contributor.author | Gang, David R. | |
dc.contributor.author | Jiang, Ning | |
dc.contributor.author | Yandell, Mark | |
dc.contributor.author | dePamphilis, Claude W. | |
dc.contributor.author | Merchant, Sabeeha S. | |
dc.contributor.author | Paterson, Andrew H. | |
dc.contributor.author | Buchanan, Bob B. | |
dc.contributor.author | Li, Shaohua | |
dc.contributor.author | Shen-Miller, Jane | |
dc.date.accessioned | 2019-09-25T18:24:40Z | |
dc.date.available | 2019-09-25T18:24:40Z | |
dc.date.issued | 2013-05-10 | |
dc.identifier | oksd_ming_genomeofthelong_2013 | |
dc.identifier.citation | Ming, R., VanBuren, R., Liu, Y., Yang, M., Han, Y., Li, L.-T., � Shen-Miller, J. (2013). Genome of the long-living sacred lotus (Nelumbo nucifera Gaertn.). Genome Biology, 14(5), Article R41. https://doi.org/10.1186/gb-2013-14-5-r41 | |
dc.identifier.uri | https://hdl.handle.net/11244/321431 | |
dc.description.abstract | Background: Sacred lotus is a basal eudicot with agricultural, medicinal, cultural and religious importance. It was domesticated in Asia about 7,000 years ago, and cultivated for its rhizomes and seeds as a food crop. It is particularly noted for its 1,300-year seed longevity and exceptional water repellency, known as the lotus effect. The latter property is due to the nanoscopic closely packed protuberances of its self-cleaning leaf surface, which have been adapted for the manufacture of a self-cleaning industrial paint, Lotusan. | |
dc.description.abstract | Results: The genome of the China Antique variety of the sacred lotus was sequenced with Illumina and 454 technologies, at respective depths of 101x and 5.2x. The final assembly has a contig N50 of 38.8 kbp and a scaffold N50 of 3.4 Mbp, and covers 86.5% of the estimated 929 Mbp total genome size. The genome notably lacks the paleo-triplication observed in other eudicots, but reveals a lineage-specific duplication. The genome has evidence of slow evolution, with a 30% slower nucleotide mutation rate than observed in grape. Comparisons of the available sequenced genomes suggest a minimum gene set for vascular plants of 4,223 genes. Strikingly, the sacred lotus has 16 COG2132 multi-copper oxidase family proteins with root-specific expression; these are involved in root meristem phosphate starvation, reflecting adaptation to limited nutrient availability in an aquatic environment. | |
dc.description.abstract | Conclusions: The slow nucleotide substitution rate makes the sacred lotus a better resource than the current standard, grape, for reconstructing the pan-eudicot genome, and should therefore accelerate comparative analysis between eudicots and monocots. | |
dc.format | application/pdf | |
dc.language | en_US | |
dc.publisher | BioMed Central | |
dc.rights | This material has been previously published. In the Oklahoma State University Library's institutional repository this version is made available through the open access principles and the terms of agreement/consent between the author(s) and the publisher. The permission policy on the use, reproduction or distribution of the material falls under fair use for educational, scholarship, and research purposes. Contact Digital Resources and Discovery Services at lib-dls@okstate.edu or 405-744-9161 for further information. | |
dc.title | Genome of the long-living sacred lotus (Nelumbo nucifera Gaertn.) | |
osu.filename | oksd_ming_genomeofthelong_2013.pdf | |
dc.description.peerreview | Peer reviewed | |
dc.identifier.doi | 10.1186/gb-2013-14-5-r41 | |
dc.description.department | Biochemistry and Molecular Biology | |
dc.type.genre | Article | |
dc.type.material | Text | |
dc.subject.keywords | whole genome duplication | |
dc.subject.keywords | phosphate starvation | |
dc.subject.keywords | phylogenomic analysis | |
dc.subject.keywords | seed longevity | |
dc.subject.keywords | sacred lotus | |