dc.contributor.author | Melcher, Ulrich | |
dc.contributor.author | Verma, Ruchi | |
dc.contributor.author | Schneider, William L. | |
dc.date.accessioned | 2019-08-28T16:00:48Z | |
dc.date.available | 2019-08-28T16:00:48Z | |
dc.date.issued | 2014-06-11 | |
dc.identifier | oksd_melcher_metagenomicsear_2014 | |
dc.identifier.citation | Melcher, U., Verma, R., & Schneider, W. L. (2014). Metagenomic search strategies for interactions among plants and multiple microbes. Frontiers in Plant Science, 5, Article 268. https://doi.org/10.3389/fpls.2014.00268 | |
dc.identifier.uri | https://hdl.handle.net/11244/321371 | |
dc.description.abstract | Plants harbor multiple microbes. Metagenomics can facilitate understanding of the significance, for the plant, of the microbes, and of the interactions among them. However, current approaches to metagenomic analysis of plants are computationally time consuming. Efforts to speed the discovery process include improvement of computational speed, condensing the sequencing reads into smaller datasets before BLAST searches, simplifying the target database of BLAST searches, and flipping the roles of metagenomic and reference datasets. The latter is exemplified by the e-probe diagnostic nucleic acid analysis approach originally devised for improving analysis during plant quarantine. | |
dc.format | application/pdf | |
dc.language | en_US | |
dc.publisher | Frontiers Media | |
dc.rights | This material has been previously published. In the Oklahoma State University Library's institutional repository this version is made available through the open access principles and the terms of agreement/consent between the author(s) and the publisher. The permission policy on the use, reproduction or distribution of the material falls under fair use for educational, scholarship, and research purposes. Contact Digital Resources and Discovery Services at lib-dls@okstate.edu or 405-744-9161 for further information. | |
dc.title | Metagenomic search strategies for interactions among plants and multiple microbes | |
osu.filename | oksd_melcher_metagenomicsear_2014.pdf | |
dc.description.peerreview | Peer reviewed | |
dc.identifier.doi | 10.3389/fpls.2014.00268 | |
dc.description.department | Biochemistry and Molecular Biology | |
dc.type.genre | Article | |
dc.type.material | Text | |
dc.subject.keywords | e-probes | |
dc.subject.keywords | blast | |
dc.subject.keywords | microbial consortia | |
dc.subject.keywords | taxonomic classification | |
dc.subject.keywords | databases | |
dc.subject.keywords | edna | |